Cancer-miRNA Regulatory Network

Compendium of miRNA Target Genes

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Cellular Macromolecule Biosynthetic Process (GO:0034645) Genes Targeted by hsa-mir-513a-3p in COID Lung Bhattacharjee Cluster 74 Table contains all genes in the COID Lung Bhattacharjee cluster number 74. If a gene harbors a predicted miRNA binding site by one of the three inference methods it is displayed in the final column: M = Weeder-miRvestigator predicted site, P = PITA predicted site and T = TargetScan predicted site. Entrez ID Symbol Description hsa-mir-513a-3p GO:0034645 2657 GDF1 growth differentiation factor 1 [Source:HGNC Symbol;Acc:4214] zzz999 25839 COG4 component of oligomeric golgi complex 4 [Source:HGNC Symbol;Acc:18620] zzz999 4108 MAGEA9 melanoma antigen family A, 9 [Source:HGNC Symbol;Acc:6807] zzz999 23469 PHF3 PHD finger protein 3 [Source:HGNC Symbol;Acc:8921] P T Yes 23019 CNOT1 CCR4-NOT transcription complex, subunit 1 [Source:HGNC Symbol;Acc:7877] T Yes 7639 ZNF85 zinc finger protein 85 [Source:HGNC Symbol;Acc:13160] T Yes 10607 TBL3 transducin (beta)-like 3 [Source:HGNC Symbol;Acc:11587] zzz999 3929 LBP lipopolysaccharide binding protein [Source:HGNC Symbol;Acc:6517] zzz999 3713 IVL involucrin [Source:HGNC Symbol;Acc:6187] zzz999 23394 ADNP activity-dependent neuroprotector homeobox [Source:HGNC Symbol;Acc:15766] zzz999 Yes 5498 PPOX protoporphyrinogen oxidase [Source:HGNC Symbol;Acc:9280] zzz999 5087 PBX1 pre-B-cell leukemia homeobox 1 [Source:HGNC Symbol;Acc:8632] zzz999 Yes 4899 NRF1 nuclear respiratory factor 1 [Source:HGNC Symbol;Acc:7996] P T Yes 23390 ZDHHC17 zinc finger, DHHC-type containing 17 [Source:HGNC Symbol;Acc:18412] P T Yes 22929 SEPHS1 selenophosphate synthetase 1 [Source:HGNC Symbol;Acc:19685] zzz999 11044 PAPD7 PAP associated domain containing 7 [Source:HGNC Symbol;Acc:16705] P T Yes 26240 FAM50B family with sequence similarity 50, member B [Source:HGNC Symbol;Acc:18789] T 22884 WDR37 WD repeat domain 37 [Source:HGNC Symbol;Acc:31406] zzz999 26993 AKAP8L A kinase (PRKA) anchor protein 8-like [Source:HGNC Symbol;Acc:29857] zzz999 116987 AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 [Source:HGNC Symbol;Acc:16922] zzz999 5706 PSMC6 proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Source:HGNC Symbol;Acc:9553] P T 7716 VEZF1 vascular endothelial zinc finger 1 [Source:HGNC Symbol;Acc:12949] P T Yes 1676 DFFA DNA fragmentation factor, 45kDa, alpha polypeptide [Source:HGNC Symbol;Acc:2772] zzz999 27342 RABGEF1 RAB guanine nucleotide exchange factor (GEF) 1 [Source:HGNC Symbol;Acc:17676] T 11083 DIDO1 death inducer-obliterator 1 [Source:HGNC Symbol;Acc:2680] zzz999 Yes 23174 ZCCHC14 zinc finger, CCHC domain containing 14 [Source:HGNC Symbol;Acc:24134] T 9202 ZMYM4 zinc finger, MYM-type 4 [Source:HGNC Symbol;Acc:13055] P T 8228 PNPLA4 patatin-like phospholipase domain containing 4 [Source:HGNC Symbol;Acc:24887] T 3842 TNPO1 transportin 1 [Source:HGNC Symbol;Acc:6401] T 220988 HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:24941] zzz999 1589 CYP21A2 cytochrome P450, family 21, subfamily A, polypeptide 2 [Source:HGNC Symbol;Acc:2600] zzz999 80303 EFHD1 EF-hand domain family, member D1 [Source:HGNC Symbol;Acc:29556] zzz999 6833 ABCC8 ATP-binding cassette, sub-family C (CFTR/MRP), member 8 [Source:HGNC Symbol;Acc:59] zzz999 9181 ARHGEF2 Rho/Rac guanine nucleotide exchange factor (GEF) 2 [Source:HGNC Symbol;Acc:682] T Yes 4897 NRCAM neuronal cell adhesion molecule [Source:HGNC Symbol;Acc:7994] P T 8481 OFD1 oral-facial-digital syndrome 1 [Source:HGNC Symbol;Acc:2567] zzz999 10915 TCERG1 transcription elongation regulator 1 [Source:HGNC Symbol;Acc:15630] zzz999 Yes 9584 RBM39 RNA binding motif protein 39 [Source:HGNC Symbol;Acc:15923] zzz999 Yes 25875 LETMD1 LETM1 domain containing 1 [Source:HGNC Symbol;Acc:24241] zzz999 3360 HTR4 5-hydroxytryptamine (serotonin) receptor 4 [Source:HGNC Symbol;Acc:5299] zzz999 6433 SFSWAP splicing factor, suppressor of white-apricot homolog (Drosophila) [Source:HGNC Symbol;Acc:10790] zzz999 Yes 5876 RABGGTB Rab geranylgeranyltransferase, beta subunit [Source:HGNC Symbol;Acc:9796] T 92170 zzz999 Mitochondrial GTPase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9BT17] zzz999 80003 PCNXL2 pecanex-like 2 (Drosophila) [Source:HGNC Symbol;Acc:8736] zzz999 648 BMI1 BMI1 polycomb ring finger oncogene [Source:HGNC Symbol;Acc:1066] P T Yes 4140 MARK3 MAP/microtubule affinity-regulating kinase 3 [Source:HGNC Symbol;Acc:6897] T 57209 ZNF248 zinc finger protein 248 [Source:HGNC Symbol;Acc:13041] T Yes 3298 HSF2 heat shock transcription factor 2 [Source:HGNC Symbol;Acc:5225] zzz999 Yes 2155 F7 coagulation factor VII (serum prothrombin conversion accelerator) [Source:HGNC Symbol;Acc:3544] zzz999 221443 C6orf130 chromosome 6 open reading frame 130 [Source:HGNC Symbol;Acc:21257] P T 25957 SFRS18 splicing factor, arginine/serine-rich 18 [Source:HGNC Symbol;Acc:21222] zzz999 3188 HNRNPH2 heterogeneous nuclear ribonucleoprotein H2 (H') [Source:HGNC Symbol;Acc:5042] zzz999 81609 SNX27 sorting nexin family member 27 [Source:HGNC Symbol;Acc:20073] T 23318 ZCCHC11 zinc finger, CCHC domain containing 11 [Source:HGNC Symbol;Acc:28981] zzz999 Yes 90410 IFT20 intraflagellar transport 20 homolog (Chlamydomonas) [Source:HGNC Symbol;Acc:30989] zzz999 23014 FBXO21 F-box protein 21 [Source:HGNC Symbol;Acc:13592] T 10099 TSPAN3 tetraspanin 3 [Source:HGNC Symbol;Acc:17752] zzz999 10443 N4BP2L2 NEDD4 binding protein 2-like 2 [Source:HGNC Symbol;Acc:26916] zzz999 26048 ZNF500 zinc finger protein 500 [Source:HGNC Symbol;Acc:23716] zzz999 Yes 9883 POM121 POM121 membrane glycoprotein [Source:HGNC Symbol;Acc:19702] T 7072 TIA1 TIA1 cytotoxic granule-associated RNA binding protein [Source:HGNC Symbol;Acc:11802] zzz999 Yes 29798 C2orf27A chromosome 2 open reading frame 27A [Source:HGNC Symbol;Acc:25077] zzz999 84869 CBR4 carbonyl reductase 4 [Source:HGNC Symbol;Acc:25891] T 11017 SNRNP27 small nuclear ribonucleoprotein 27kDa (U4/U6.U5) [Source:HGNC Symbol;Acc:30240] zzz999 8539 API5 apoptosis inhibitor 5 [Source:HGNC Symbol;Acc:594] zzz999 9988 DMTF1 cyclin D binding myb-like transcription factor 1 [Source:HGNC Symbol;Acc:14603] zzz999 Yes 1861 TOR1A torsin family 1, member A (torsin A) [Source:HGNC Symbol;Acc:3098] zzz999 23405 DICER1 dicer 1, ribonuclease type III [Source:HGNC Symbol;Acc:17098] P T 5494 PPM1A protein phosphatase, Mg2+/Mn2+ dependent, 1A [Source:HGNC Symbol;Acc:9275] zzz999 Yes 10084 PQBP1 polyglutamine binding protein 1 [Source:HGNC Symbol;Acc:9330] zzz999 Yes 112 ADCY6 adenylate cyclase 6 [Source:HGNC Symbol;Acc:237] zzz999 1025 CDK9 cyclin-dependent kinase 9 [Source:HGNC Symbol;Acc:1780] zzz999 Yes 7398 USP1 ubiquitin specific peptidase 1 [Source:HGNC Symbol;Acc:12607] P T 29978 UBQLN2 ubiquilin 2 [Source:HGNC Symbol;Acc:12509] T 81689 ISCA1 iron-sulfur cluster assembly 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:28660] zzz999 90634 N4BP2L1 NEDD4 binding protein 2-like 1 [Source:HGNC Symbol;Acc:25037] T 7702 ZNF143 zinc finger protein 143 [Source:HGNC Symbol;Acc:12928] zzz999 Yes 9917 FAM20B family with sequence similarity 20, member B [Source:HGNC Symbol;Acc:23017] T 9318 COPS2 COP9 constitutive photomorphogenic homolog subunit 2 (Arabidopsis) [Source:HGNC Symbol;Acc:30747] T Yes 5891 RAGE renal tumor antigen [Source:HGNC Symbol;Acc:9833] zzz999 53335 BCL11A B-cell CLL/lymphoma 11A (zinc finger protein) [Source:HGNC Symbol;Acc:13221] P T Yes 22863 ATG14 ATG14 autophagy related 14 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:19962] T 91 ACVR1B activin A receptor, type IB [Source:HGNC Symbol;Acc:172] zzz999 Yes 23033 DOPEY1 dopey family member 1 [Source:HGNC Symbol;Acc:21194] zzz999 3211 HOXB1 homeobox B1 [Source:HGNC Symbol;Acc:5111] zzz999 Yes 9757 zzz999 Histone-lysine N-methyltransferase MLL4 [Source:UniProtKB/Swiss-Prot;Acc:Q9UMN6] zzz999 Yes 23116 FAM179B family with sequence similarity 179, member B [Source:HGNC Symbol;Acc:19959] P T 253782 LASS6 LAG1 homolog, ceramide synthase 6 [Source:HGNC Symbol;Acc:23826] zzz999 Yes 10772 SRSF10 serine/arginine-rich splicing factor 10 [Source:HGNC Symbol;Acc:16713] T Yes 546 ATRX alpha thalassemia/mental retardation syndrome X-linked [Source:HGNC Symbol;Acc:886] T Yes 1429 CRYZ crystallin, zeta (quinone reductase) [Source:HGNC Symbol;Acc:2419] T 196441 ZFC3H1 zinc finger, C3H1-type containing [Source:HGNC Symbol;Acc:28328] P T 8480 RAE1 RAE1 RNA export 1 homolog (S. pombe) [Source:HGNC Symbol;Acc:9828] zzz999 54665 RSBN1 round spermatid basic protein 1 [Source:HGNC Symbol;Acc:25642] P T 3609 ILF3 interleukin enhancer binding factor 3, 90kDa [Source:HGNC Symbol;Acc:6038] T Yes 91746 YTHDC1 YTH domain containing 1 [Source:HGNC Symbol;Acc:30626] T 5892 RAD51L3 RAD51-like 3 (S. cerevisiae) [Source:HGNC Symbol;Acc:9823] zzz999 2901 GRIK5 glutamate receptor, ionotropic, kainate 5 [Source:HGNC Symbol;Acc:4583] zzz999 10152 ABI2 abl-interactor 2 [Source:HGNC Symbol;Acc:24011] T 10489 LRRC41 leucine rich repeat containing 41 [Source:HGNC Symbol;Acc:16917] zzz999 2002 ELK1 ELK1, member of ETS oncogene family [Source:HGNC Symbol;Acc:3321] P T Yes 4040 LRP6 low density lipoprotein receptor-related protein 6 [Source:HGNC Symbol;Acc:6698] P T Yes 3643 INSR insulin receptor [Source:HGNC Symbol;Acc:6091] T Yes 7266 DNAJC7 DnaJ (Hsp40) homolog, subfamily C, member 7 [Source:HGNC Symbol;Acc:12392] zzz999 22889 KIAA0907 KIAA0907 [Source:HGNC Symbol;Acc:29145] T 6294 SAFB scaffold attachment factor B [Source:HGNC Symbol;Acc:10520] zzz999 Yes 2071 ERCC3 excision repair cross-complementing rodent repair deficiency, complementation group 3 (xeroderma pigmentosum group B complementing) [Source:HGNC Symbol;Acc:3435] zzz999 Yes 4143 MAT1A methionine adenosyltransferase I, alpha [Source:HGNC Symbol;Acc:6903] zzz999 124152 IQCK IQ motif containing K [Source:HGNC Symbol;Acc:28556] P T 9125 RQCD1 RCD1 required for cell differentiation1 homolog (S. pombe) [Source:HGNC Symbol;Acc:10445] zzz999 Yes 25898 RCHY1 ring finger and CHY zinc finger domain containing 1 [Source:HGNC Symbol;Acc:17479] T 8880 FUBP1 far upstream element (FUSE) binding protein 1 [Source:HGNC Symbol;Acc:4004] P T Yes 6426 SRSF1 serine/arginine-rich splicing factor 1 [Source:HGNC Symbol;Acc:10780] T Yes 3233 HOXD4 homeobox D4 [Source:HGNC Symbol;Acc:5138] zzz999 Yes 9788 MTSS1 metastasis suppressor 1 [Source:HGNC Symbol;Acc:20443] zzz999 5887 RAD23B RAD23 homolog B (S. cerevisiae) [Source:HGNC Symbol;Acc:9813] T 9053 MAP7 microtubule-associated protein 7 [Source:HGNC Symbol;Acc:6869] T 23035 PHLPP2 PH domain and leucine rich repeat protein phosphatase 2 [Source:HGNC Symbol;Acc:29149] T 6421 SFPQ splicing factor proline/glutamine-rich [Source:HGNC Symbol;Acc:10774] zzz999 Yes 5431 POLR2B polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Source:HGNC Symbol;Acc:9188] zzz999 Yes 23291 FBXW11 F-box and WD repeat domain containing 11 [Source:HGNC Symbol;Acc:13607] P T Yes 7692 ZNF133 zinc finger protein 133 [Source:HGNC Symbol;Acc:12917] zzz999 Yes 10687 PNMA2 paraneoplastic antigen MA2 [Source:HGNC Symbol;Acc:9159] zzz999 9360 PPIG peptidylprolyl isomerase G (cyclophilin G) [Source:HGNC Symbol;Acc:14650] zzz999 8446 DUSP11 dual specificity phosphatase 11 (RNA/RNP complex 1-interacting) [Source:HGNC Symbol;Acc:3066] T 7095 SEC62 SEC62 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:11846] T 10664 CTCF CCCTC-binding factor (zinc finger protein) [Source:HGNC Symbol;Acc:13723] zzz999 Yes 4780 NFE2L2 nuclear factor (erythroid-derived 2)-like 2 [Source:HGNC Symbol;Acc:7782] zzz999 Yes 7690 ZNF131 zinc finger protein 131 [Source:HGNC Symbol;Acc:12915] T Yes 9129 PRPF3 PRP3 pre-mRNA processing factor 3 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:17348] zzz999 5495 PPM1B protein phosphatase, Mg2+/Mn2+ dependent, 1B [Source:HGNC Symbol;Acc:9276] P T 51351 ZNF117 zinc finger protein 117 [Source:HGNC Symbol;Acc:12897] T Yes 140890 SREK1 splicing regulatory glutamine/lysine-rich protein 1 [Source:HGNC Symbol;Acc:17882] zzz999 3837 KPNB1 karyopherin (importin) beta 1 [Source:HGNC Symbol;Acc:6400] T 89910 UBE3B ubiquitin protein ligase E3B [Source:HGNC Symbol;Acc:13478] T 5537 PPP6C protein phosphatase 6, catalytic subunit [Source:HGNC Symbol;Acc:9323] P T 55818 KDM3A lysine (K)-specific demethylase 3A [Source:HGNC Symbol;Acc:20815] zzz999 Yes 51592 TRIM33 tripartite motif containing 33 [Source:HGNC Symbol;Acc:16290] P T Yes 9088 PKMYT1 protein kinase, membrane associated tyrosine/threonine 1 [Source:HGNC Symbol;Acc:29650] zzz999 5257 PHKB phosphorylase kinase, beta [Source:HGNC Symbol;Acc:8927] T 142 PARP1 poly (ADP-ribose) polymerase 1 [Source:HGNC Symbol;Acc:270] zzz999 Yes 253959 RALGAPA1 Ral GTPase activating protein, alpha subunit 1 (catalytic) [Source:HGNC Symbol;Acc:17770] zzz999 27030 MLH3 mutL homolog 3 (E. coli) [Source:HGNC Symbol;Acc:7128] T 1523 CUX1 cut-like homeobox 1 [Source:HGNC Symbol;Acc:2557] zzz999 Yes 9782 MATR3 matrin 3 [Source:HGNC Symbol;Acc:6912] P T 10902 BRD8 bromodomain containing 8 [Source:HGNC Symbol;Acc:19874] zzz999 Yes 23774 BRD1 bromodomain containing 1 [Source:HGNC Symbol;Acc:1102] T 23133 PHF8 PHD finger protein 8 [Source:HGNC Symbol;Acc:20672] zzz999 Yes 26057 ANKRD17 ankyrin repeat domain 17 [Source:HGNC Symbol;Acc:23575] P T 50804 MYEF2 myelin expression factor 2 [Source:HGNC Symbol;Acc:17940] zzz999 Yes

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